itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField > Class Template Reference
[Geometric Transformation Filters]

Warps an image using an input deformation field. More...

#include <itkWarpVectorImageFilter.h>

Inheritance diagram for itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >:

[legend]Collaboration diagram for itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >:

[legend]List of all members.

Public Types
typedef WarpVectorImageFilter	Self
typedef ImageToImageFilter< TInputImage, TOutputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TOutputImage::RegionType	OutputImageRegionType
typedef Superclass::InputImageType	InputImageType
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::OutputImageType	OutputImageType
typedef Superclass::OutputImagePointer	OutputImagePointer
typedef Superclass::InputImageConstPointer	InputImageConstPointer
typedef OutputImageType::IndexType	IndexType
typedef OutputImageType::SizeType	SizeType
typedef OutputImageType::PixelType	PixelType
typedef OutputImageType::SpacingType	SpacingType
typedef OutputImageType::PixelType::ValueType	ValueType
typedef TDeformationField	DeformationFieldType
typedef DeformationFieldType::Pointer	DeformationFieldPointer
typedef DeformationFieldType::PixelType	DisplacementType
typedef double	CoordRepType
typedef VectorInterpolateImageFunction< InputImageType, CoordRepType >	InterpolatorType
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef VectorLinearInterpolateImageFunction< InputImageType, CoordRepType >	DefaultInterpolatorType
typedef Point< CoordRepType, itkGetStaticConstMacro(ImageDimension)	PointType )
Public Member Functions
virtual const char *	GetNameOfClass () const
	itkStaticConstMacro (ImageDimension, unsigned int, TOutputImage::ImageDimension)
	itkStaticConstMacro (PixelDimension, unsigned int, PixelType::Dimension)
void	SetDeformationField (DeformationFieldType *field)
DeformationFieldType *	GetDeformationField (void)
virtual void	SetInterpolator (InterpolatorType *_arg)
virtual InterpolatorType *	GetInterpolator ()
virtual const SpacingType &	GetOutputSpacing ()
virtual const PointType &	GetOutputOrigin ()
virtual void	SetEdgePaddingValue (PixelType _arg)
virtual PixelType	GetEdgePaddingValue ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateInputRequestedRegion ()
virtual void	BeforeThreadedGenerateData ()
virtual void	SetOutputSpacing (SpacingType _arg)
virtual void	SetOutputSpacing (const double *values)
virtual void	SetOutputOrigin (PointType _arg)
virtual void	SetOutputOrigin (const double *values)
Static Public Member Functions
Pointer	New ()
Protected Member Functions
	WarpVectorImageFilter ()
	~WarpVectorImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int threadId)

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Detailed Description

template<class TInputImage, class TOutputImage, class TDeformationField>
class itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >

Warps an image using an input deformation field.

WarpVectorImageFilter warps an existing image with respect to a given deformation field. The input image is expected to have vector-like pixel types.

A deformation field is represented as a image whose pixel type is some vector type with at least N elements, where N is the dimension of the input image. The vector type must support element access via operator [].

The output image is produced by inverse mapping: the output pixels are mapped back onto the input image. This scheme avoids the creation of any holes and overlaps in the output image.

Each vector in the deformation field represent the distance between a geometric point in the input space and a point in the output space such that:

Typically the mapped position does not correspond to an integer pixel position in the input image. Interpolation via an image function is used to compute values at non-integer positions. The default interpolation typed used is the LinearInterpolateImageFunction. The user can specify a particular interpolation function via SetInterpolator(). Note that the input interpolator must derive from base class InterpolateImageFunction.

Position mapped to outside of the input image buffer are assigned a edge padding value.

The LargetPossibleRegion for the output is inherited from the input deformation field. The output image spacing and origin may be set via SetOutputSpacing, SetOutputOrigin. The default are respectively a vector of 1's and a vector of 0's.

This class is templated over the type of the input image, the type of the output image and the type of the deformation field.

The input image is set via SetInput. The input deformation field is set via SetDeformationField.

This filter is implemented as a multithreaded filter.

Warning:

This filter assumes that the input type, output type and deformation field type all have the same number of dimensions.

Author:

Corinne Mattmann

Definition at line 87 of file itkWarpVectorImageFilter.h.

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Member Typedef Documentation

template<class TInputImage, class TOutputImage, class TDeformationField> typedef SmartPointer<const Self> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::ConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 95 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef double itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::CoordRepType

Interpolator typedef support. Definition at line 132 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef VectorLinearInterpolateImageFunction<InputImageType,CoordRepType> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::DefaultInterpolatorType

Definition at line 136 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef DeformationFieldType::Pointer itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::DeformationFieldPointer

Definition at line 128 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef TDeformationField itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::DeformationFieldType

Deformation field typedef support. Definition at line 127 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef DeformationFieldType::PixelType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::DisplacementType

Definition at line 129 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef OutputImageType::IndexType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::IndexType

Definition at line 112 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef Superclass::InputImageConstPointer itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::InputImageConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 111 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef Superclass::InputImagePointer itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::InputImagePointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 108 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef Superclass::InputImageType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::InputImageType

Inherit some types from the superclass. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 107 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef InterpolatorType::Pointer itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::InterpolatorPointer

Definition at line 134 of file itkWarpVectorImageFilter.h. Referenced by itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::~WarpVectorImageFilter().

template<class TInputImage, class TOutputImage, class TDeformationField> typedef VectorInterpolateImageFunction<InputImageType,CoordRepType> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::InterpolatorType

Definition at line 133 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef Superclass::OutputImagePointer itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::OutputImagePointer

Reimplemented from itk::ImageSource< TOutputImage >. Definition at line 110 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef TOutputImage::RegionType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::OutputImageRegionType

Typedef to describe the output image region type. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 104 of file itkWarpVectorImageFilter.h. Referenced by itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::~WarpVectorImageFilter().

template<class TInputImage, class TOutputImage, class TDeformationField> typedef Superclass::OutputImageType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::OutputImageType

Some convenient typedefs. Reimplemented from itk::ImageSource< TOutputImage >. Definition at line 109 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef OutputImageType::PixelType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::PixelType

Definition at line 114 of file itkWarpVectorImageFilter.h. Referenced by itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::~WarpVectorImageFilter().

template<class TInputImage, class TOutputImage, class TDeformationField> typedef SmartPointer<Self> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::Pointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 94 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef Point<CoordRepType,itkGetStaticConstMacro(ImageDimension) itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::PointType)

Point type Definition at line 139 of file itkWarpVectorImageFilter.h. Referenced by itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::~WarpVectorImageFilter().

template<class TInputImage, class TOutputImage, class TDeformationField> typedef WarpVectorImageFilter itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::Self

Standard class typedefs. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 92 of file itkWarpVectorImageFilter.h. Referenced by itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::~WarpVectorImageFilter().

template<class TInputImage, class TOutputImage, class TDeformationField> typedef OutputImageType::SizeType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SizeType

Definition at line 113 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef OutputImageType::SpacingType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SpacingType

Definition at line 115 of file itkWarpVectorImageFilter.h. Referenced by itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::~WarpVectorImageFilter().

template<class TInputImage, class TOutputImage, class TDeformationField> typedef ImageToImageFilter<TInputImage,TOutputImage> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::Superclass

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 93 of file itkWarpVectorImageFilter.h.

template<class TInputImage, class TOutputImage, class TDeformationField> typedef OutputImageType::PixelType::ValueType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::ValueType

Definition at line 116 of file itkWarpVectorImageFilter.h.

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Constructor & Destructor Documentation

template<class TInputImage, class TOutputImage, class TDeformationField> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::WarpVectorImageFilter (   )  [protected]

template<class TInputImage, class TOutputImage, class TDeformationField> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::~WarpVectorImageFilter (   )  [inline, protected]

Definition at line 196 of file itkWarpVectorImageFilter.h. References itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::InterpolatorPointer, itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::OutputImageRegionType, itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::PixelType, itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::PointType, itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::Self, and itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SpacingType.

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Member Function Documentation

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::BeforeThreadedGenerateData (   )  [virtual]

This method is used to set the state of the filter before multi-threading. Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GenerateInputRequestedRegion (   )  [virtual]

It is difficult to compute in advance the input image region required to compute the requested output region. Thus the safest thing to do is to request for the whole input image. For the deformation field, the input requested region set to be the same as that of the output requested region. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GenerateOutputInformation (   )  [virtual]

WarpVectorImageFilter produces an image which is a different size than its input image. As such, it needs to provide an implemenation for GenerateOutputInformation() which set the output information according the OutputSpacing, OutputOrigin and the deformation field's LargestPossibleRegion. Reimplemented from itk::ProcessObject.

template<class TInputImage, class TOutputImage, class TDeformationField> DeformationFieldType* itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GetDeformationField (  void   )

Get a pointer the deformation field.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual PixelType itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GetEdgePaddingValue (   )  [virtual]

Get the edge padding value

template<class TInputImage, class TOutputImage, class TDeformationField> virtual InterpolatorType* itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GetInterpolator (   )  [virtual]

Get a pointer to the interpolator function.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual const char* itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GetNameOfClass (   )  const [virtual]

Run-time type information (and related methods) Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual const PointType& itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GetOutputOrigin (   )  [virtual]

Get the output image origin.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual const SpacingType& itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::GetOutputSpacing (   )  [virtual]

Get the output image spacing.

template<class TInputImage, class TOutputImage, class TDeformationField> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::itkStaticConstMacro (  PixelDimension  , unsigned  int, PixelType::Dimension  )

Dimension of the Vector pixel type.

template<class TInputImage, class TOutputImage, class TDeformationField> itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::itkStaticConstMacro (  ImageDimension  , unsigned  int, TOutputImage::ImageDimension  )

Determine the image dimension.

template<class TInputImage, class TOutputImage, class TDeformationField> Pointer itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::New (   )  [static]

Method for creation through the object factory. Reimplemented from itk::Object.

template<class TInputImage, class TOutputImage, class TDeformationField> void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::PrintSelf (  std::ostream &  os, Indent  indent )  const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage, class TDeformationField> void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SetDeformationField (  DeformationFieldType *  field  )

Set the deformation field.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SetEdgePaddingValue (  PixelType  _arg  )  [virtual]

Set the edge padding value

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SetInterpolator (  InterpolatorType *  _arg  )  [virtual]

Set the interpolator function.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SetOutputOrigin (  const double *  values  )  [virtual]

Set the output image origin.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SetOutputOrigin (  PointType  _arg  )  [virtual]

Set the output image origin.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SetOutputSpacing (  const double *  values  )  [virtual]

Set the output image spacing.

template<class TInputImage, class TOutputImage, class TDeformationField> virtual void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::SetOutputSpacing (  SpacingType  _arg  )  [virtual]

Set the output image spacing.

template<class TInputImage, class TOutputImage, class TDeformationField> void itk::WarpVectorImageFilter< TInputImage, TOutputImage, TDeformationField >::ThreadedGenerateData (  const OutputImageRegionType &  outputRegionForThread, int  threadId )  [protected, virtual]

WarpVectorImageFilter is implemented as a multi-threaded filter. As such, it needs to provide and implementation for ThreadedGenerateData(). Reimplemented from itk::ImageSource< TOutputImage >.

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The documentation for this class was generated from the following file:

• itkWarpVectorImageFilter.h

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