itk::watershed::SegmentTreeGenerator< TScalarType > Class Template Reference

#include <itkWatershedSegmentTreeGenerator.h>

Inheritance diagram for itk::watershed::SegmentTreeGenerator< TScalarType >:

[legend]Collaboration diagram for itk::watershed::SegmentTreeGenerator< TScalarType >:

[legend]List of all members.

[NOHEADER]
typedef SegmentTreeGenerator	Self
typedef ProcessObject	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
virtual const char *	GetNameOfClass () const
Pointer	New ()
Public Types
typedef TScalarType	ScalarType
typedef SegmentTable< ScalarType >	SegmentTableType
typedef SegmentTree< ScalarType >	SegmentTreeType
typedef EquivalencyTable	EquivalencyTableType
typedef OneWayEquivalencyTable	OneWayEquivalencyTableType
typedef DataObject::Pointer	DataObjectPointer
typedef SegmentTableType::Pointer	SegmentTableTypePointer
typedef OneWayEquivalencyTableType::Pointer	OneWayEquivalencyTableTypePointer
typedef SegmentTreeType::Pointer	SegmentTreeTypePointer
Public Member Functions
SegmentTreeType *	GetOutputSegmentTree ()
void	GenerateData ()
virtual DataObjectPointer	MakeOutput (unsigned int idx)
SegmentTableType *	GetInputSegmentTable ()
void	SetInputSegmentTable (SegmentTableType *st)
void	SetInputEquivalencyTable (EquivalencyTableType *eq)
EquivalencyTableType *	GetInputEquivalencyTable ()
virtual void	SetMerge (bool _arg)
virtual bool	GetMerge ()
void	SetFloodLevel (double)
virtual double	GetFloodLevel ()
virtual void	SetHighestCalculatedFloodLevel (double _arg)
virtual double	GetHighestCalculatedFloodLevel ()
virtual void	SetConsumeInput (bool _arg)
virtual bool	GetConsumeInput ()
Static Public Member Functions
void	MergeSegments (SegmentTableTypePointer, OneWayEquivalencyTableTypePointer, const unsigned long, const unsigned long)
void	PruneMergeSegments (SegmentTableTypePointer, OneWayEquivalencyTableTypePointer, const unsigned long, const unsigned long, ScalarType)
Protected Member Functions
	SegmentTreeGenerator ()
virtual	~SegmentTreeGenerator ()
	SegmentTreeGenerator (const Self &)
void	operator= (const Self &)
void	PrintSelf (std::ostream &os, Indent indent) const
void	CompileMergeList (SegmentTableTypePointer, SegmentTreeTypePointer)
void	ExtractMergeHierarchy (SegmentTableTypePointer, SegmentTreeTypePointer)
void	MergeEquivalencies ()
void	GenerateOutputRequestedRegion (DataObject *output)
void	GenerateInputRequestedRegion ()

template<class TScalarType>
class itk::watershed::SegmentTreeGenerator< TScalarType >

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Member Typedef Documentation

template<class TScalarType> typedef SmartPointer<const Self> itk::watershed::SegmentTreeGenerator< TScalarType >::ConstPointer

Standard itk smart pointer declarations Reimplemented from itk::ProcessObject. Definition at line 85 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef DataObject::Pointer itk::watershed::SegmentTreeGenerator< TScalarType >::DataObjectPointer

Smart Pointer type to a DataObject. Reimplemented from itk::ProcessObject. Definition at line 96 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef EquivalencyTable itk::watershed::SegmentTreeGenerator< TScalarType >::EquivalencyTableType

Definition at line 94 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef OneWayEquivalencyTable itk::watershed::SegmentTreeGenerator< TScalarType >::OneWayEquivalencyTableType

Definition at line 95 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef OneWayEquivalencyTableType::Pointer itk::watershed::SegmentTreeGenerator< TScalarType >::OneWayEquivalencyTableTypePointer

Definition at line 101 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef SmartPointer<Self> itk::watershed::SegmentTreeGenerator< TScalarType >::Pointer

Standard itk smart pointer declarations Reimplemented from itk::ProcessObject. Definition at line 84 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef TScalarType itk::watershed::SegmentTreeGenerator< TScalarType >::ScalarType

Convenient type definitions Definition at line 91 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef SegmentTable<ScalarType> itk::watershed::SegmentTreeGenerator< TScalarType >::SegmentTableType

Definition at line 92 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef SegmentTableType::Pointer itk::watershed::SegmentTreeGenerator< TScalarType >::SegmentTableTypePointer

Typedefs to avoid internal compiler error bug on Microsoft VC++ Definition at line 99 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef SegmentTree<ScalarType> itk::watershed::SegmentTreeGenerator< TScalarType >::SegmentTreeType

Definition at line 93 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef SegmentTreeType::Pointer itk::watershed::SegmentTreeGenerator< TScalarType >::SegmentTreeTypePointer

Definition at line 102 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef SegmentTreeGenerator itk::watershed::SegmentTreeGenerator< TScalarType >::Self

Standard itk smart pointer declarations Reimplemented from itk::ProcessObject. Definition at line 82 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> typedef ProcessObject itk::watershed::SegmentTreeGenerator< TScalarType >::Superclass

Standard itk smart pointer declarations Reimplemented from itk::ProcessObject. Definition at line 83 of file itkWatershedSegmentTreeGenerator.h.

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Constructor & Destructor Documentation

template<class TScalarType> itk::watershed::SegmentTreeGenerator< TScalarType >::SegmentTreeGenerator (   )  [protected]

template<class TScalarType> virtual itk::watershed::SegmentTreeGenerator< TScalarType >::~SegmentTreeGenerator (   )  [inline, protected, virtual]

Definition at line 197 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> itk::watershed::SegmentTreeGenerator< TScalarType >::SegmentTreeGenerator (  const Self &   )  [inline, protected]

Definition at line 198 of file itkWatershedSegmentTreeGenerator.h.

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Member Function Documentation

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::CompileMergeList (  SegmentTableTypePointer  , SegmentTreeTypePointer  )  [protected]

Generates an initial list of all potentential merges in the segment table.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::ExtractMergeHierarchy (  SegmentTableTypePointer  , SegmentTreeTypePointer  )  [protected]

Compiles a list of all the actual segment merges up to the specified flood level, recomputing new potential merges as it goes.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::GenerateData (   )  [virtual]

Standard non-threaded itk pipeline method Reimplemented from itk::ProcessObject.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::GenerateInputRequestedRegion (   )  [protected, virtual]

Methods required by the itk pipeline Reimplemented from itk::ProcessObject.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::GenerateOutputRequestedRegion (  DataObject *  output  )  [protected, virtual]

Methods required by the itk pipeline Reimplemented from itk::ProcessObject.

template<class TScalarType> virtual bool itk::watershed::SegmentTreeGenerator< TScalarType >::GetConsumeInput (   )  [virtual]

Get/Set a flag that prevents the filter from copying its input segment table before executing. This can be enabled to conserve memory, especially in streaming applications where memory is a concern. If enabled, the input to this filter must always be re-executed on updates. Default is false.

template<class TScalarType> virtual double itk::watershed::SegmentTreeGenerator< TScalarType >::GetFloodLevel (   )  [virtual]

Get/Set FloodLevel. FloodLevel is specified as a percentage (0.0 - 1.0) of the maximum possible saliency value in the initial image from which the segment table was derived. A value of 0.0 calculates no merges. A value of 1.0 calculates all of the potential merges that can occur as the FloodLevel is increased to the maximum saliency value.

template<class TScalarType> virtual double itk::watershed::SegmentTreeGenerator< TScalarType >::GetHighestCalculatedFloodLevel (   )  [virtual]

Get/Set HighestCalculatedFloodLevel. HighestCalculatedFloodLevel keeps track of the highest level this filter has computed. It is used to prevent unneccessary re-execution of the filter.

template<class TScalarType> EquivalencyTableType* itk::watershed::SegmentTreeGenerator< TScalarType >::GetInputEquivalencyTable (   )  [inline]

Get/Set input table of equivalencies to pre-merge before running the tree generator algorithm. Only useful for streaming applications Definition at line 129 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> SegmentTableType* itk::watershed::SegmentTreeGenerator< TScalarType >::GetInputSegmentTable (   )  [inline]

Get/Set the input table of segments to process Definition at line 106 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> virtual bool itk::watershed::SegmentTreeGenerator< TScalarType >::GetMerge (   )  [virtual]

Get/Set a boolean flag indicating whether or not to pre-merge the segments marked as equivalent in the EquivalencyTable. This is only useful for streaming applications and is turned off by default. (TRUE == merge, FALSE == do not merge).

template<class TScalarType> virtual const char* itk::watershed::SegmentTreeGenerator< TScalarType >::GetNameOfClass (   )  const [virtual]

Standard itk smart pointer declarations Reimplemented from itk::ProcessObject.

template<class TScalarType> SegmentTreeType* itk::watershed::SegmentTreeGenerator< TScalarType >::GetOutputSegmentTree (   )  [inline]

Get/Set the output data Definition at line 137 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> virtual DataObjectPointer itk::watershed::SegmentTreeGenerator< TScalarType >::MakeOutput (  unsigned int  idx  )  [virtual]

Standard itk::ProcessObject subclass method. Reimplemented from itk::ProcessObject.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::MergeEquivalencies (   )  [protected]

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::MergeSegments (  SegmentTableTypePointer  , OneWayEquivalencyTableTypePointer  , const unsigned  long, const unsigned  long )  [static]

Performs a merge of two segments in a SegmentTable according to criteria specific to this algorithm.

template<class TScalarType> Pointer itk::watershed::SegmentTreeGenerator< TScalarType >::New (   )  [static]

Standard itk smart pointer declarations Reimplemented from itk::Object.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::operator= (  const Self &   )  [inline, protected]

Reimplemented from itk::ProcessObject. Definition at line 199 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::PrintSelf (  std::ostream &  os, Indent  indent )  const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes. Reimplemented from itk::ProcessObject.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::PruneMergeSegments (  SegmentTableTypePointer  , OneWayEquivalencyTableTypePointer  , const unsigned  long, const unsigned  long, ScalarType  )  [static]

This method should not be used. It will be removed in future versions of this filter.

template<class TScalarType> virtual void itk::watershed::SegmentTreeGenerator< TScalarType >::SetConsumeInput (  bool  _arg  )  [virtual]

Get/Set a flag that prevents the filter from copying its input segment table before executing. This can be enabled to conserve memory, especially in streaming applications where memory is a concern. If enabled, the input to this filter must always be re-executed on updates. Default is false.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::SetFloodLevel (  double   )

Get/Set FloodLevel. FloodLevel is specified as a percentage (0.0 - 1.0) of the maximum possible saliency value in the initial image from which the segment table was derived. A value of 0.0 calculates no merges. A value of 1.0 calculates all of the potential merges that can occur as the FloodLevel is increased to the maximum saliency value.

template<class TScalarType> virtual void itk::watershed::SegmentTreeGenerator< TScalarType >::SetHighestCalculatedFloodLevel (  double  _arg  )  [virtual]

Get/Set HighestCalculatedFloodLevel. HighestCalculatedFloodLevel keeps track of the highest level this filter has computed. It is used to prevent unneccessary re-execution of the filter.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::SetInputEquivalencyTable (  EquivalencyTableType *  eq  )  [inline]

Get/Set input table of equivalencies to pre-merge before running the tree generator algorithm. Only useful for streaming applications Definition at line 125 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> void itk::watershed::SegmentTreeGenerator< TScalarType >::SetInputSegmentTable (  SegmentTableType *  st  )  [inline]

Get/Set the input table of segments to process Definition at line 110 of file itkWatershedSegmentTreeGenerator.h.

template<class TScalarType> virtual void itk::watershed::SegmentTreeGenerator< TScalarType >::SetMerge (  bool  _arg  )  [virtual]

Get/Set a boolean flag indicating whether or not to pre-merge the segments marked as equivalent in the EquivalencyTable. This is only useful for streaming applications and is turned off by default. (TRUE == merge, FALSE == do not merge).

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The documentation for this class was generated from the following file:

• itkWatershedSegmentTreeGenerator.h

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