itk::bio::Genome Class Reference

This class implement the abstraction of a biological genome. More...

#include <itkBioGenome.h>

List of all members.

Public Types
typedef std::string	GeneIdType
typedef std::map< GeneIdType, double >	MapType
Public Member Functions
	Genome ()
virtual	~Genome ()
void	Copy (const Genome &genome)
void	InsertGene (const GeneIdType &geneId)
void	KnockOutGene (const GeneIdType &geneId)
double	GetExpressionLevel (const GeneIdType &geneId)
void	SetExpressionLevel (const GeneIdType &geneId, double level)
Static Public Member Functions
double	Sigmoide (double threshold, double slant, double value)

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Detailed Description

This class implement the abstraction of a biological genome.

The genome is considered to be a sequence of genes each one having a name and a level of expression. This class is intended to be used by artificial cells implementing cellular algorithms for image processing.

Definition at line 43 of file itkBioGenome.h.

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Member Typedef Documentation

typedef std::string itk::bio::Genome::GeneIdType

Definition at line 46 of file itkBioGenome.h.

typedef std::map< GeneIdType, double > itk::bio::Genome::MapType

Definition at line 47 of file itkBioGenome.h.

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Constructor & Destructor Documentation

itk::bio::Genome::Genome (   )

virtual itk::bio::Genome::~Genome (   )  [virtual]

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Member Function Documentation

void itk::bio::Genome::Copy (  const Genome &  genome  )

double itk::bio::Genome::GetExpressionLevel (  const GeneIdType &  geneId  )

void itk::bio::Genome::InsertGene (  const GeneIdType &  geneId  )

void itk::bio::Genome::KnockOutGene (  const GeneIdType &  geneId  )

void itk::bio::Genome::SetExpressionLevel (  const GeneIdType &  geneId, double  level )

double itk::bio::Genome::Sigmoide (  double  threshold, double  slant, double  value )  [inline, static]

This method computes a normalized Sigmoide function that can be used for gene network computations. Definition at line 63 of file itkBioGenome.h.

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The documentation for this class was generated from the following file:

• itkBioGenome.h

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