#include <itkSparseFieldLevelSetImageFilter.h>
Inheritance diagram for itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >:
3. Starting with the first layers adjacent to the active set and moving outwards, reconstruct the distance transform by setting values in the layers according to their neighbors. At the very outer layers, add or remove indicies which have come into or moved out of the sparse field.
Definition at line 227 of file itkSparseFieldLevelSetImageFilter.h.
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Information derived from the image types. Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. Reimplemented in itk::AntiAliasBinaryImageFilter< TInputImage, TOutputImage >, and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 248 of file itkSparseFieldLevelSetImageFilter.h. |
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A type for a list of LayerPointerTypes Definition at line 266 of file itkSparseFieldLevelSetImageFilter.h. |
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Memory pre-allocator used to manage layer nodes in a multi-threaded environment. Definition at line 278 of file itkSparseFieldLevelSetImageFilter.h. |
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Node type used in sparse field layer lists. Definition at line 259 of file itkSparseFieldLevelSetImageFilter.h. |
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Definition at line 263 of file itkSparseFieldLevelSetImageFilter.h. |
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A list type used in the algorithm. Reimplemented in itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >. Definition at line 262 of file itkSparseFieldLevelSetImageFilter.h. |
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The type of the image used to index status information. Necessary for the internals of the algorithm. Definition at line 274 of file itkSparseFieldLevelSetImageFilter.h. |
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Type used for storing status information Definition at line 269 of file itkSparseFieldLevelSetImageFilter.h. |
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Typedefs from the superclass Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. Reimplemented in itk::AntiAliasBinaryImageFilter< TInputImage, TOutputImage >, and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >. Definition at line 239 of file itkSparseFieldLevelSetImageFilter.h. |
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Container type used to store updates to the active layer. Definition at line 281 of file itkSparseFieldLevelSetImageFilter.h. |
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Reserves memory in the update buffer. Called before each iteration. Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. |
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Applies the update buffer values to the active layer and reconstructs the sparse field layers for the next iteration. Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. |
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Traverses the active layer list and calculates the change at these indicies to be applied in the current iteration. Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. |
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This function allows a subclass to override the way in which updates to output values are applied during each iteration. The default simply follows the standard finite difference scheme of scaling the change by the timestep and adding to the value of the previous iteration. Reimplemented in itk::AntiAliasBinaryImageFilter< TInputImage, TOutputImage >. Definition at line 324 of file itkSparseFieldLevelSetImageFilter.h. |
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Constructs the active layer and initialize the first layers inside and outside of the active layer. The active layer defines the position of the zero level set by its values, which are constrained within a range around zero. |
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Initializes a layer of the sparse field using a previously initialized layer. Builds the list of nodes in m_Layer[to] using m_Layer[from]. Marks values in the m_StatusImage. |
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Copies the input to the output image. Processing occurs on the output image, so the data type of the output image determines the precision of the calculations (i.e. double or float). This method overrides the parent class method to do some additional processing. Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. |
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Get/Set the value of the InterpolateSurfaceLocation flag. This flag tells the solver whether or not to interpolate for the surface location when calculating change at a voxel location. Turned on by default. Some applications may not use this value and can safely turn the flag off. |
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Set/Get the value of the isosurface to use in the input image. |
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Set/Get the number of layers to use in the sparse field. Argument is the number of layers on ONE side of the active layer, so the total layers in the sparse field is 2 * NumberOfLayers +1 |
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Constructs the sparse field layers and initializes their values. Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. |
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Initializes the values of the active layer set. |
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This method pre-processes pixels inside and outside the sparse field layers. The default is to set them to positive and negative values, respectively. This is not necessary as part of the calculations, but produces a more intuitive output for the user. |
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See Get/SetInterpolateSurfaceLocation Definition at line 311 of file itkSparseFieldLevelSetImageFilter.h. |
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See Get/SetInterpolateSurfaceLocation Definition at line 309 of file itkSparseFieldLevelSetImageFilter.h. |
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This method packages the output(s) into a consistent format. The default implementation produces a volume with the final solution values in the sparse field, and inside and outside values elsewhere as appropriate. Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >. |
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Adjusts the values associated with all the index layers of the sparse field by propagating out one layer at a time from the active set. This method also takes care of deleting nodes from the layers which have been marked in the status image as having been moved to other layers. |
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Adjusts the values in a single layer "to" using values in a neighboring layer "from". The list of indicies in "to" are traversed and assigned new values appropriately. Any indicies in "to" without neighbors in "from" are moved into the "promote" layer (or deleted if "promote" is greater than the number of layers). "InOrOut" == 1 indicates this propagation is inwards (more negative). "InOrOut" == 2 indicates this propagation is outwards (more positive). |
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Get/Set the value of the InterpolateSurfaceLocation flag. This flag tells the solver whether or not to interpolate for the surface location when calculating change at a voxel location. Turned on by default. Some applications may not use this value and can safely turn the flag off. |
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Set/Get the value of the isosurface to use in the input image. |
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Set/Get the number of layers to use in the sparse field. Argument is the number of layers on ONE side of the active layer, so the total layers in the sparse field is 2 * NumberOfLayers +1 Reimplemented in itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >. |
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Updates the active layer values using m_UpdateBuffer. Also creates an "up" and "down" list for promotion/demotion of indicies leaving the active set. |
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The constant gradient to maintain between isosurfaces in the spare-field of the level-set image. This value defaults to 1.0 Definition at line 414 of file itkSparseFieldLevelSetImageFilter.h. |
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This flag tells the solver whether or not to interpolate for the actual surface location when calculating change at each active layer node. By default this is turned on. Subclasses which do not sample propagation (speed), advection, or curvature terms should turn this flag off. Definition at line 480 of file itkSparseFieldLevelSetImageFilter.h. |
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The value in the input which represents the isosurface of interest. Definition at line 465 of file itkSparseFieldLevelSetImageFilter.h. |
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Storage for layer node objects. Definition at line 462 of file itkSparseFieldLevelSetImageFilter.h. |
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An array which contains all of the layers needed in the sparse field. Layers are organized as follows: m_Layer[0] = active layer, m_Layer[i:odd] = inside layer (i+1)/2, m_Layer[i:even] = outside layer i/2 Definition at line 451 of file itkSparseFieldLevelSetImageFilter.h. |
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Connectivity information for examining neighbor pixels. Definition at line 410 of file itkSparseFieldLevelSetImageFilter.h. |
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The number of layers to use in the sparse field. Sparse field will consist of m_NumberOfLayers layers on both sides of a single active layer. This active layer is the interface of interest, i.e. the zero level set. Definition at line 456 of file itkSparseFieldLevelSetImageFilter.h. |
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This image is a copy of the input with m_IsoSurfaceValue subtracted from each pixel. This way we only need to consider the zero level set in our calculations. Makes the implementation easier and more efficient. Definition at line 445 of file itkSparseFieldLevelSetImageFilter.h. |
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Special status value which indicates a pending change to a more negative sparse field. Definition at line 432 of file itkSparseFieldLevelSetImageFilter.h. |
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Special status value which indicates a pending change to a more positive sparse field. Definition at line 428 of file itkSparseFieldLevelSetImageFilter.h. |
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Special status value which indicates a pixel is on the boundary of the image Definition at line 436 of file itkSparseFieldLevelSetImageFilter.h. |
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Special status value which indicates pending change to another sparse field layer. Definition at line 424 of file itkSparseFieldLevelSetImageFilter.h. |
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An image of status values used internally by the algorithm. Definition at line 459 of file itkSparseFieldLevelSetImageFilter.h. |
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Special status value used as a default for indicies which have no meaningful status. Definition at line 440 of file itkSparseFieldLevelSetImageFilter.h. |
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The update buffer used to store change values computed in CalculateChange. Definition at line 469 of file itkSparseFieldLevelSetImageFilter.h. |
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Multiplicative identity of the ValueType. Definition at line 417 of file itkSparseFieldLevelSetImageFilter.h. |
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Additive identity of the ValueType. Definition at line 420 of file itkSparseFieldLevelSetImageFilter.h. |