itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage > Class Template Reference
[Region Growing Filters]

Label pixels that are connected to a seed and lie within a neighborhood. More...

#include <itkNeighborhoodConnectedImageFilter.h>

Inheritance diagram for itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >:

[legend]Collaboration diagram for itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >:

[legend]List of all members.

Public Types
typedef NeighborhoodConnectedImageFilter	Self
typedef ImageToImageFilter< TInputImage, TOutputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage	InputImageType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::IndexType	IndexType
typedef InputImageType::SizeType	InputImageSizeType
typedef TOutputImage	OutputImageType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef OutputImageType::PixelType	OutputImagePixelType
Public Member Functions
virtual const char *	GetNameOfClass () const
void	PrintSelf (std::ostream &os, Indent indent) const
void	ClearSeeds ()
void	SetSeed (const IndexType &seed)
virtual void	SetRadius (InputImageSizeType _arg)
virtual const InputImageSizeType &	GetRadius ()
void	AddSeed (const IndexType &seed)
virtual void	SetLower (InputImagePixelType _arg)
virtual InputImagePixelType	GetLower ()
virtual void	SetUpper (InputImagePixelType _arg)
virtual InputImagePixelType	GetUpper ()
virtual void	SetReplaceValue (OutputImagePixelType _arg)
virtual OutputImagePixelType	GetReplaceValue ()
Static Public Member Functions
Pointer	New ()
Protected Member Functions
	NeighborhoodConnectedImageFilter ()
	~NeighborhoodConnectedImageFilter ()
void	GenerateInputRequestedRegion ()
void	EnlargeOutputRequestedRegion (DataObject *output)
void	GenerateData ()
Protected Attributes
std::vector< IndexType >	m_Seeds
InputImagePixelType	m_Lower
InputImagePixelType	m_Upper
OutputImagePixelType	m_ReplaceValue
InputImageSizeType	m_Radius

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Detailed Description

template<class TInputImage, class TOutputImage>
class itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >

Label pixels that are connected to a seed and lie within a neighborhood.

/class NeighborhoodConnectedImageFilter

NeighborhoodConnectedImageFilter labels pixels with ReplaceValue that are connected to an initial Seed AND whose neighbors all lie within a Lower and Upper threshold range.

Definition at line 35 of file itkNeighborhoodConnectedImageFilter.h.

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Member Typedef Documentation

template<class TInputImage, class TOutputImage> typedef SmartPointer<const Self> itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::ConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 44 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef InputImageType::IndexType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::IndexType

Definition at line 57 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef InputImageType::PixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::InputImagePixelType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 56 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef InputImageType::Pointer itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::InputImagePointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 54 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef InputImageType::RegionType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::InputImageRegionType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 55 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef InputImageType::SizeType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::InputImageSizeType

Definition at line 58 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef TInputImage itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::InputImageType

Some convenient typedefs. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 53 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef OutputImageType::PixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::OutputImagePixelType

Reimplemented from itk::ImageSource< TOutputImage >. Definition at line 63 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef OutputImageType::Pointer itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::OutputImagePointer

Reimplemented from itk::ImageSource< TOutputImage >. Definition at line 61 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef OutputImageType::RegionType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::OutputImageRegionType

Superclass typedefs. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 62 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef TOutputImage itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::OutputImageType

Some convenient typedefs. Reimplemented from itk::ImageSource< TOutputImage >. Definition at line 60 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef SmartPointer<Self> itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::Pointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 43 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef NeighborhoodConnectedImageFilter itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 41 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> typedef ImageToImageFilter<TInputImage,TOutputImage> itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::Superclass

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >. Definition at line 42 of file itkNeighborhoodConnectedImageFilter.h.

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Constructor & Destructor Documentation

template<class TInputImage, class TOutputImage> itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::NeighborhoodConnectedImageFilter (   )  [protected]

template<class TInputImage, class TOutputImage> itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::~NeighborhoodConnectedImageFilter (   )  [inline, protected]

Definition at line 115 of file itkNeighborhoodConnectedImageFilter.h.

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Member Function Documentation

template<class TInputImage, class TOutputImage> void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::AddSeed (  const IndexType &  seed  )  [inline]

Add a seed point Definition at line 82 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::ClearSeeds (   )  [inline]

Clear the seeds Definition at line 68 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::EnlargeOutputRequestedRegion (  DataObject *  output  )  [protected, virtual]

Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region. Reimplemented from itk::ProcessObject.

template<class TInputImage, class TOutputImage> void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::GenerateData (   )  [protected, virtual]

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead. See also: ThreadedGenerateData() Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage, class TOutputImage> void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::GenerateInputRequestedRegion (   )  [protected, virtual]

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierachy. Up till now, the base assumption has been that the largest possible region will be requested of the input. This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types. See also: ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion() Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage> virtual InputImagePixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::GetLower (   )  [virtual]

Set/Get the lower threshold. The default is 0.

template<class TInputImage, class TOutputImage> virtual const char* itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::GetNameOfClass (   )  const [virtual]

Run-time type information (and related methods). Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage> virtual const InputImageSizeType& itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::GetRadius (   )  [virtual]

Get the radius of the neighborhood used to compute the median

template<class TInputImage, class TOutputImage> virtual OutputImagePixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::GetReplaceValue (   )  [virtual]

Set/Get value to replace thresholded pixels. Pixels that lie * within Lower and Upper (inclusive) will be replaced with this value. The default is 1.

template<class TInputImage, class TOutputImage> virtual InputImagePixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::GetUpper (   )  [virtual]

Set/Get the upper threshold. The default is the largest possible value for the InputPixelType.

template<class TInputImage, class TOutputImage> Pointer itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::New (   )  [static]

Method for creation through the object factory. Reimplemented from itk::Object.

template<class TInputImage, class TOutputImage> void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::PrintSelf (  std::ostream &  os, Indent  indent )  const [virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes. Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage, class TOutputImage> virtual void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::SetLower (  InputImagePixelType  _arg  )  [virtual]

Set/Get the lower threshold. The default is 0.

template<class TInputImage, class TOutputImage> virtual void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::SetRadius (  InputImageSizeType  _arg  )  [virtual]

Set the radius of the neighborhood used for a mask.

template<class TInputImage, class TOutputImage> virtual void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::SetReplaceValue (  OutputImagePixelType  _arg  )  [virtual]

Set/Get value to replace thresholded pixels. Pixels that lie * within Lower and Upper (inclusive) will be replaced with this value. The default is 1.

template<class TInputImage, class TOutputImage> void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::SetSeed (  const IndexType &  seed  )  [inline]

Set seed point. Definition at line 75 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> virtual void itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::SetUpper (  InputImagePixelType  _arg  )  [virtual]

Set/Get the upper threshold. The default is the largest possible value for the InputPixelType.

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Member Data Documentation

template<class TInputImage, class TOutputImage> InputImagePixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::m_Lower [protected]

Definition at line 117 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> InputImageSizeType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::m_Radius [protected]

Definition at line 120 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> OutputImagePixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::m_ReplaceValue [protected]

Definition at line 119 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> std::vector<IndexType> itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::m_Seeds [protected]

Definition at line 116 of file itkNeighborhoodConnectedImageFilter.h.

template<class TInputImage, class TOutputImage> InputImagePixelType itk::NeighborhoodConnectedImageFilter< TInputImage, TOutputImage >::m_Upper [protected]

Definition at line 118 of file itkNeighborhoodConnectedImageFilter.h.

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The documentation for this class was generated from the following file:

• itkNeighborhoodConnectedImageFilter.h

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