itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction > Class Template Reference
[Pixel Classification Filters]

Base class for ImageKmeansModelEstimator object. More...

#include <itkImageKmeansModelEstimator.h>

Inheritance diagram for itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >:

[legend]Collaboration diagram for itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >:

[legend]List of all members.

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void	PrintKmeansAlgorithmResults ()
Public Types
typedef ImageKmeansModelEstimator	Self
typedef ImageModelEstimatorBase< TInputImage, TMembershipFunction >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage	InputImageType
typedef TInputImage::Pointer	InputImagePointer
typedef TInputImage::ConstPointer	InputImageConstPointer
typedef TInputImage::PixelType::VectorType	InputImageVectorType
typedef TInputImage::PixelType	InputImagePixelType
typedef ImageRegionIterator< TInputImage >	InputImageIterator
typedef ImageRegionConstIterator< TInputImage >	InputImageConstIterator
typedef TMembershipFunction::Pointer	MembershipFunctionPointer
typedef vnl_matrix< double >	CodebookMatrixOfDoubleType
typedef vnl_matrix< int >	CodebookMatrixOfIntegerType
Public Member Functions
virtual const char *	GetNameOfClass () const
void	SetCodebook (CodebookMatrixOfDoubleType InCodebook)
virtual CodebookMatrixOfDoubleType	GetCodebook ()
CodebookMatrixOfDoubleType	GetOutCodebook ()
virtual void	SetThreshold (double _arg)
virtual double	GetThreshold ()
virtual void	SetOffsetAdd (double _arg)
virtual double	GetOffsetAdd ()
virtual void	SetOffsetMultiply (double _arg)
virtual double	GetOffsetMultiply ()
virtual void	SetMaxSplitAttempts (int _arg)
virtual int	GetMaxSplitAttempts ()
CodebookMatrixOfDoubleType	GetKmeansResults (void)
Static Public Member Functions
Pointer	New ()
Protected Member Functions
	ImageKmeansModelEstimator ()
	~ImageKmeansModelEstimator ()
virtual void	PrintSelf (std::ostream &os, Indent indent) const
void	GenerateData ()
void	Allocate ()

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Detailed Description

template<class TInputImage, class TMembershipFunction>
class itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >

Base class for ImageKmeansModelEstimator object.

itkImageKmeansModelEstimator generated the kmeans model (cluster centers). This object performs clustering of data sets into different clusters either using user provided seed points as initial guess or generating the clusters using a recursive approach when the user provides the number of desired clusters. Each cluster is represented by its cluster center. The two algorithms used are the generalized Lloyd algorithm (GLA) and the Linde-Buzo-Gray algorithms. The cluster centers are also referred to as codewords and a table of cluster centers is is referred as a codebook.

As required by the GLA algorithm, the initial seed cluster should contain approximate centers of clusters. The GLA algorithm genrates an updated cluster centers that result in a lower distortion than the input seed cluster when the input vectors are mapped/classified/labelled using the given codebooks.

If no codebook is provided, the Linde-Buzo-Gray algorithm is used. This algorithm uses the GLA algorithm at its core to generate the centroids of the input vectors (data). However, since there is no initial codebook, LBG first creates a one word codebook (or centroid of one cluster comprising of all the input training vectors). The LBG uses codeword/or centroid splitting to create increasing number of clusters. Each new set of clusters are optimized using the GLA algorithm. The number of clusters increases as $2^{n}$ n= 0, 1, ... The codebook is expected to be in the form of a vnl matrix, where there are N rows. each row representing the cluster mean of a given cluster. The number of columns in a the codebook should be equal to the input image vector dimension.

The threshold parameter controls the ``optimality'' of the returned codebook where optimality is related to the least possible mean-squared error distortion that can be found by the algorithm. For larger thresholds, the result will be less optimal. For smaller thresholds, the result will be more optimal. If a more optimal result is desired, then the algorithm will take longer to complete. A reasonable threshold value is 0.01.

If, during the operation of the algorithm, there are any unused clusters or cells, the m_OffsetAdd and m_OffsetMultiply parameters is used to split the cells with the highest distortion. This functions will attempt to fill empty cells up to 10 times (unless the overall distortion is zero). Using 0.01 is a reasonable default values for the m_OffsetAdd and m_OffsetMultiply parameters.

If the GLA is unable to resolve the data into the desired number of clusters or cells, only the codewords which were used will be returned.

In terms of clustering, codewords are cluster centers, and a codebook is a table containing all cluster centers. The GLA produces results that are equivalent to the K-means clustering algorithm.

For more information about the algorithms, see A. Gersho and R. M. Gray, {Vector Quantization and Signal Compression}, Kluwer Academic Publishers, Boston, MA, 1992.

This object supports data handling of multiband images. The object accepts the input image in vector format only, where each pixel is a vector and each element of the vector corresponds to an entry from 1 particular band of a multiband dataset. A single band image is treated as a vector image with a single element for every vector.

This function is templated over the type of input image. In addition, a second parameter for the MembershipFunction needs to be specified. In this case a Membership function that store cluster centroids models needs to be specified.

The Update() function enables the calculation of the various models, creates the membership function objects and populates them.

Note: There is a second implementation of k-means algorithm in ITK under the itk::statistics namespace. While this algorithm (GLA/LBG based algorithm) is memory efficient, the other algorithm is time efficient.

See also:

KdTreeBasedKmeansEstimator, WeightedCentroidKdTreeGenerator, KdTree

ScalarImageKmeansImageFilter

Definition at line 127 of file itkImageKmeansModelEstimator.h.

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Member Typedef Documentation

template<class TInputImage, class TMembershipFunction> typedef vnl_matrix<double> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::CodebookMatrixOfDoubleType

Type definition for a double matrix. Definition at line 168 of file itkImageKmeansModelEstimator.h. Referenced by itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetKmeansResults(), and itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetOutCodebook().

template<class TInputImage, class TMembershipFunction> typedef vnl_matrix<int> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::CodebookMatrixOfIntegerType

Type definition for an integer vector. Definition at line 171 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef SmartPointer<const Self> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::ConstPointer

Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >. Definition at line 136 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef ImageRegionConstIterator<TInputImage> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::InputImageConstIterator

Definition at line 162 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef TInputImage::ConstPointer itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::InputImageConstPointer

Definition at line 147 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef ImageRegionIterator<TInputImage> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::InputImageIterator

Type definition for the input image iterator type. Definition at line 159 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef TInputImage::PixelType itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::InputImagePixelType

Type definition for the input image pixel type. Definition at line 155 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef TInputImage::Pointer itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::InputImagePointer

Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >. Definition at line 146 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef TInputImage itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::InputImageType

Type definition for the input image. Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >. Definition at line 145 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef TInputImage::PixelType::VectorType itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::InputImageVectorType

Type definition for the vector associated with input image pixel type. Definition at line 152 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef TMembershipFunction::Pointer itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::MembershipFunctionPointer

Type definitions for the membership function . Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >. Definition at line 165 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef SmartPointer<Self> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::Pointer

Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >. Definition at line 135 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef ImageKmeansModelEstimator itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::Self

Standard class typedefs. Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >. Definition at line 132 of file itkImageKmeansModelEstimator.h.

template<class TInputImage, class TMembershipFunction> typedef ImageModelEstimatorBase<TInputImage, TMembershipFunction> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::Superclass

Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >. Definition at line 133 of file itkImageKmeansModelEstimator.h.

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Constructor & Destructor Documentation

template<class TInputImage, class TMembershipFunction> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::ImageKmeansModelEstimator (   )  [protected]

template<class TInputImage, class TMembershipFunction> itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::~ImageKmeansModelEstimator (   )  [protected]

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Member Function Documentation

template<class TInputImage, class TMembershipFunction> void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::Allocate (   )  [protected]

Allocate memory for the output model.

template<class TInputImage, class TMembershipFunction> void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GenerateData (   )  [protected, virtual]

Starts the image modelling process Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >.

template<class TInputImage, class TMembershipFunction> virtual CodebookMatrixOfDoubleType itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetCodebook (   )  [virtual]

Get the cluster centers.

template<class TInputImage, class TMembershipFunction> CodebookMatrixOfDoubleType itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetKmeansResults (  void   )  [inline]

Return the codebook/cluster centers. Definition at line 208 of file itkImageKmeansModelEstimator.h. References itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::CodebookMatrixOfDoubleType.

template<class TInputImage, class TMembershipFunction> virtual int itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetMaxSplitAttempts (   )  [virtual]

Get the manimum number of attempts to split a codeword.

template<class TInputImage, class TMembershipFunction> virtual const char* itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetNameOfClass (   )  const [virtual]

Run-time type information (and related methods). Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >.

template<class TInputImage, class TMembershipFunction> virtual double itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetOffsetAdd (   )  [virtual]

Get the offset add parameter.

template<class TInputImage, class TMembershipFunction> virtual double itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetOffsetMultiply (   )  [virtual]

Get the offset multiplication parameter.

template<class TInputImage, class TMembershipFunction> CodebookMatrixOfDoubleType itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetOutCodebook (   )  [inline]

Get the optimized codebook or the centroids of the clusters. Definition at line 180 of file itkImageKmeansModelEstimator.h. References itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::CodebookMatrixOfDoubleType.

template<class TInputImage, class TMembershipFunction> virtual double itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::GetThreshold (   )  [virtual]

Get the threshold parameter.

template<class TInputImage, class TMembershipFunction> Pointer itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::New (   )  [static]

Method for creation through the object factory. Reimplemented from itk::LightProcessObject.

template<class TInputImage, class TMembershipFunction> void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::PrintKmeansAlgorithmResults (   )  [protected]

Print out the results on the screen for visual feedback.

template<class TInputImage, class TMembershipFunction> virtual void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::PrintSelf (  std::ostream &  os, Indent  indent )  const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes. Reimplemented from itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >.

template<class TInputImage, class TMembershipFunction> void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::SetCodebook (  CodebookMatrixOfDoubleType  InCodebook  )

Set the cluster centers.

template<class TInputImage, class TMembershipFunction> virtual void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::SetMaxSplitAttempts (  int  _arg  )  [virtual]

Set the maximum number of attempts to split a codeword.

template<class TInputImage, class TMembershipFunction> virtual void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::SetOffsetAdd (  double  _arg  )  [virtual]

Set the offset add parameter.

template<class TInputImage, class TMembershipFunction> virtual void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::SetOffsetMultiply (  double  _arg  )  [virtual]

Set the offset multiplication parameter.

template<class TInputImage, class TMembershipFunction> virtual void itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >::SetThreshold (  double  _arg  )  [virtual]

Set the threshold parameter.

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The documentation for this class was generated from the following file:

• itkImageKmeansModelEstimator.h

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