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itkImageIOBase.h

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00001 /*=========================================================================
00002 
00003   Program:   Insight Segmentation & Registration Toolkit
00004   Module:    $RCSfile: itkImageIOBase.h,v $
00005   Language:  C++
00006   Date:      $Date: 2005/10/25 14:04:28 $
00007   Version:   $Revision: 1.39 $
00008 
00009   Copyright (c) Insight Software Consortium. All rights reserved.
00010   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
00011 
00012      This software is distributed WITHOUT ANY WARRANTY; without even 
00013      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
00014      PURPOSE.  See the above copyright notices for more information.
00015 
00016 =========================================================================*/
00017 #ifndef __itkImageIOBase_h
00018 #define __itkImageIOBase_h
00019 
00020 #include "itkLightProcessObject.h"
00021 #include "itkObjectFactory.h"
00022 #include "itkIndent.h"
00023 #include "itkImageIORegion.h"
00024 #include "vnl/vnl_vector.h"
00025 
00026 #include <string>
00027 
00028 namespace itk
00029 {
00030 
00058 class ITK_EXPORT ImageIOBase : public LightProcessObject
00059 {
00060 public:
00062   typedef ImageIOBase            Self;
00063   typedef LightProcessObject  Superclass;
00064   typedef SmartPointer<Self>  Pointer;
00065   
00067   itkTypeMacro(ImageIOBase, Superclass);
00068 
00070   itkSetStringMacro(FileName);
00071   itkGetStringMacro(FileName);
00072   
00074   class UnknownType {};
00075 
00079   typedef  enum {UNKNOWNPIXELTYPE,SCALAR,RGB,RGBA,OFFSET,VECTOR,
00080                  POINT,COVARIANTVECTOR,SYMMETRICSECONDRANKTENSOR,
00081                  DIFFUSIONTENSOR3D,COMPLEX,FIXEDARRAY}  IOPixelType;
00082 
00087   typedef  enum {UNKNOWNCOMPONENTTYPE,UCHAR,CHAR,USHORT,SHORT,UINT,INT,
00088                  ULONG,LONG, FLOAT,DOUBLE} IOComponentType;
00089 
00093   void SetNumberOfDimensions(unsigned int);
00094   itkGetMacro(NumberOfDimensions, unsigned int);
00095 
00099   virtual void SetDimensions(unsigned int i, unsigned int dim);
00100   virtual unsigned int GetDimensions(unsigned int i) const
00101   { return m_Dimensions[i]; }
00102 
00105   virtual void SetOrigin(unsigned int i, double origin);
00106   virtual double GetOrigin(unsigned int i) const
00107   { return m_Origin[i]; }
00108 
00111   virtual void SetSpacing(unsigned int i, double spacing);
00112   virtual double GetSpacing(unsigned int i) const
00113   { return m_Spacing[i]; }
00114 
00117   virtual void SetDirection(unsigned int i, std::vector<double> &direction);
00118   virtual void SetDirection(unsigned int i, vnl_vector<double> &direction);
00119   virtual std::vector<double> GetDirection(unsigned int i) const
00120   { return m_Direction[i]; }
00121 
00128   itkSetMacro(IORegion, ImageIORegion);
00129   itkGetMacro(IORegion, ImageIORegion);
00130 
00136   itkSetMacro(PixelType, IOPixelType);
00137   itkGetConstReferenceMacro(PixelType, IOPixelType);
00138 
00145   virtual bool SetPixelTypeInfo(const std::type_info& ptype);
00146   
00149   itkSetMacro(ComponentType,IOComponentType);
00150   itkGetConstReferenceMacro(ComponentType,IOComponentType);
00151   virtual const std::type_info& GetComponentTypeInfo() const;
00152   
00157   itkSetMacro(NumberOfComponents,unsigned int);
00158   itkGetConstReferenceMacro(NumberOfComponents,unsigned int);
00159 
00161   itkSetMacro(UseCompression,bool);
00162   itkGetConstReferenceMacro(UseCompression,bool);
00163 
00166   std::string GetComponentTypeAsString(IOComponentType) const;
00167 
00170   std::string GetPixelTypeAsString(IOPixelType) const;
00171   
00174   typedef  enum {ASCII,Binary,TypeNotApplicable} FileType;
00175   
00178   typedef  enum {BigEndian,LittleEndian,OrderNotApplicable} ByteOrder;
00179   
00182   itkSetMacro(FileType,FileType);
00183   itkGetConstReferenceMacro(FileType,FileType);
00184   void SetFileTypeToASCII()
00185   { this->SetFileType(ASCII); }
00186   void SetFileTypeToBinary()
00187   { this->SetFileType(Binary); }
00188 
00200   itkSetMacro(ByteOrder,ByteOrder);
00201   itkGetConstReferenceMacro(ByteOrder,ByteOrder);
00202   void SetByteOrderToBigEndian()
00203   { this->SetByteOrder(BigEndian); }
00204   void SetByteOrderToLittleEndian()
00205   { this->SetByteOrder(LittleEndian); }
00206   
00209   std::string GetFileTypeAsString(FileType) const;
00210 
00213   std::string GetByteOrderAsString(ByteOrder) const;
00214 
00217   virtual unsigned int GetPixelStride () const;
00218 
00220   unsigned int GetImageSizeInPixels() const;
00221 
00223   unsigned int GetImageSizeInBytes() const;
00224   
00227   unsigned int GetImageSizeInComponents() const;
00228 
00229   /*-------- This part of the interfaces deals with reading data ----- */
00230 
00233   virtual bool CanReadFile(const char*) = 0;
00234 
00237   virtual bool CanStreamRead() { return false; };
00238   
00241   virtual void ReadImageInformation() = 0;
00242   
00244   virtual void Read(void* buffer) = 0;
00245 
00246 
00247   /*-------- This part of the interfaces deals with writing data ----- */
00248 
00251   virtual bool CanWriteFile(const char*)  = 0;
00252 
00255   virtual bool CanStreamWrite() { return false; };
00256 
00259   virtual void WriteImageInformation() = 0;
00260   
00264   virtual void Write( const void* buffer) = 0;
00265 
00266   /* --- Support reading and writing data as a series of files. --- */
00267 
00273   virtual bool SupportsDimension(unsigned long dim)
00274   {return (dim == 2);}
00275 
00276 protected:
00277   ImageIOBase();
00278   ~ImageIOBase();
00279   void PrintSelf(std::ostream& os, Indent indent) const;
00280 
00282   IOPixelType m_PixelType;
00283 
00286   IOComponentType m_ComponentType;
00287 
00289   ByteOrder      m_ByteOrder;
00290   FileType       m_FileType;
00291 
00293   bool m_Initialized;
00294 
00296   std::string m_FileName;
00297 
00300   unsigned int m_NumberOfComponents;
00301 
00303   unsigned int m_NumberOfDimensions;
00304 
00306   bool m_UseCompression;
00307 
00310   ImageIORegion m_IORegion;
00311 
00313   std::vector<unsigned int> m_Dimensions;
00314 
00317   std::vector<double> m_Spacing;
00318 
00320   std::vector<double> m_Origin;
00321 
00323   std::vector<std::vector<double> > m_Direction;
00324 
00327   std::vector<unsigned int> m_Strides;
00328 
00330   virtual void Reset(const bool freeDynamic = true);
00331 
00333   void Resize(const unsigned int numDimensions, 
00334               const unsigned int* dimensions);
00335 
00342   void ComputeStrides();
00343 
00346   virtual unsigned int GetPixelSize() const;
00347 
00352   virtual unsigned int GetComponentSize() const;
00353 
00356   unsigned int GetComponentStride() const;
00357 
00360   unsigned int GetRowStride () const;
00361 
00364   unsigned int GetSliceStride () const;
00365 
00367   void WriteBufferAsASCII(std::ostream& os, const void *buffer,
00368                           IOComponentType ctype,
00369                           unsigned int numComp);
00370 
00372   void ReadBufferAsASCII(std::istream& os, void *buffer,
00373                          IOComponentType ctype,
00374                          unsigned int numComp);
00375 
00377   bool ReadBufferAsBinary(std::istream& os, void *buffer,unsigned int numComp);
00378 
00379   
00380 private:
00381   ImageIOBase(const Self&); //purposely not implemented
00382   void operator=(const Self&); //purposely not implemented
00383 
00384 
00385 };
00386 
00387 } // end namespace itk
00388 
00389 #endif // __itkImageIOBase_h

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