FSL WITH OTHER SOFTWARE
FreeSurfer - Cortical flattening and modelling
FreeSurfer is a
set of semi-automated tools for reconstruction of the brain's cortical
surface and overlay of functional data onto the reconstructed surface,
produced at MGH, Boston. We have worked together to make
interoperation of the two packages as easy as possible.
AFNI - Freeware display and analysis
AFNI is a package for
processing, analyzing, and displaying FMRI data. One of AFNI's
particular strengths is that it is a powerful display tool. Recent
changes to AFNI make it very easy to view FSL output, in particular,
FEAT output.