Virtual Laboratory for e-Science
The Proof-of-Concept Environment

Proposed PoC R3 distribution content

The following list is a proposed list of packages for the upcoming PoC R3 distribution.

Package	R2 Version	R3 Version	Web site
Java SDK	1.4.2	1.5.0	http://java.sun.com
	1.5.0
FSL	3.3	4.0	http://www.fmrib.ox.ac.uk/fsl
GAT	1.8.2	1.8.2	http://www.gridlab.org/WorkPackages/wp-1/gatreleases.html
JavaGAT	1.7	1.7.1	https://gforge.cs.vu.nl/projects/javagat
MatlabMPI	1.2	1.2	http://www.ll.mit.edu/MatlabMPI
Mesa3D	6.4.2	7.0.2	http://www.mesa3d.org
R	2.4.0	2.6.1	http://www.r-project.org
Rmpi	0.5-3	0.5-5	http://www.stats.uwo.ca/faculty/yu/Rmpi
SRB	3.4.2	3.4.2	http://www.sdsc.edu/srb
ant	1.6.2	1.6.2	http://ant.apache.org
globus-toolkit	4.0.5	4.0.5	http://www-unix.globus.org/toolkit
graphviz	2.12	2.16	http://www.graphviz.org
ibis	1.4	2.0	http://www.cs.vu.nl/ibis
itk	2.8.1	3.4.0	http://www.itk.org
kepler	1.0.0beta2	1.0.0beta3	http://kepler-project.org
lam	7.1.2	7.1.2	http://www.lam-mpi.org
lucene	1.4.3	1.4.3	http://lucene.apache.org/
	2.0.0	2.2.0
modules	3.2.3	3.2.3	http://modules.sf.net
mpitb	2.1.73	2.1.73	http://atc.ugr.es/javier-bin/mpitb
mricro	1.39.3	1.39.3	http://www.sph.sc.edu/comd/rorden/mricro.html
nimrod/G	3.2.0	Moved	http://www.csse.monash.edu.au/~nimrod
nimrod/O	2.8.0	Moved	http://www.csse.monash.edu.au/~nimrod
octave	2.1.73	2.1.73	http://www.octave.org
ogsadai-wsrf	2.2	Dropped	http://www.ogsadai.org.uk
paraview	2.4.4	3.2	http://www.paraview.org
swi-prolog (pl)	5.6.22	5.6.48	http://www.swi-prolog.org
sesame-client	1.2.5	1.2.7	http://www.openrdf.org
taverna-workbench	1.4	1.7	http://taverna.sf.net
vlet/vbrowser	0.7.3	0.7.5	http://poc.vl-e.nl
vl-e	2.0	3.0	http://poc.vl-e.nl
vtk	4.4	4.4	http://public.kitware.com/VTK
	5.0.2	5.0.3
weka	3.4.8a	3.4.12	http://www.cs.waikato.ac.nz/ml/weka

Additionally, the following packages are scheduled for inclusion in the VL-e contrib area.

Package	Version	Web site
DeVIDE	ng1phase1 6.8.7T	http://visualisation.tudelft.nl/Projects/DeVIDE
VRX	1.0 ??	http://visualisation.tudelft.nl/Projects/VRX
Mono	1.2.5	http:///www.mono-project.org